
Assistant Professor
Cardiovascular Research Institute
Research Interests
Computational Cardiology and Imaging
Websites
Faculty Type
Core CVRI Faculty
Research Summary:
In the Cardiac Vision Laboratory we focus on developing imaging methodology that can be used to better diagnose life-threatening heart rhythm disorders and heart disease. Combining techniques from bioengineering, computer vision and artificial intelligence with the physics of complex biological systems, we aim to study the heart’s highly dynamic behavior, and bridge the gap between basic cardiovascular science, high-resolution imaging and numerical modeling.
Publications
Utilization of Broad Consent as an Effective Instrument for Study Recruitment.
Studies in health technology and informatics
AAV9-mediated KCNH2 suppression-replacement gene therapy in a transgenic rabbit model of type 1 short QT syndrome.
European heart journal
Uncovering the Understanding of the Concept of Patient Similarity in Cancer Research and Treatment: Scoping Review.
Journal of medical Internet research
Building a Knowledge Base for Variant Annotation Using Therapy Recommendations in cBioPortal.
Studies in health technology and informatics
Prototypical Visualization of Patient Similarities in cBioPortal to Enhance Decision-Making in Molecular Tumor Boards.
Studies in health technology and informatics
Empowering personalized oncology: evolution of digital support and visualization tools for molecular tumor boards.
BMC medical informatics and decision making
Identifications of Similarity Metrics for Patients With Cancer: Protocol for a Scoping Review.
JMIR research protocols
Dreaming of electrical waves: Generative modeling of cardiac excitation waves using diffusion models.
APL machine learning
Data Visualization Support for Tumor Boards and Clinical Oncology: Protocol for a Scoping Review.
JMIR research protocols
Extending cBioPortal for Therapy Recommendation Documentation in Molecular Tumor Boards: Development and Usability Study.
JMIR medical informatics
Paralysis by analysis: Overcoming cardiac contraction with computer vision.
Proceedings of the National Academy of Sciences of the United States of America
Optical mapping of contracting hearts.
The Journal of physiology
Repolarization indicates electrical instability in ventricular arrhythmia originating from papillary muscle.
Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology
Reconstruction of three-dimensional scroll waves in excitable media from two-dimensional observations using deep neural networks.
Physical review. E
N-glycosylation Regulates Intrinsic IFN-γ Resistance in Colorectal Cancer: Implications for Immunotherapy.
Gastroenterology
Real-Time Optical Mapping of Contracting Cardiac Tissues With GPU-Accelerated Numerical Motion Tracking.
Frontiers in cardiovascular medicine
Searching of Clinical Trials Made Easier in cBioPortal Using Patients' Genetic and Clinical Profiles.
Applied clinical informatics
cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board.
BMC medical informatics and decision making
Rotor Localization and Phase Mapping of Cardiac Excitation Waves Using Deep Neural Networks.
Frontiers in physiology
Challenges and Experiences Extending the cBioPortal for Cancer Genomics to a Molecular Tumor Board Platform.
Studies in health technology and informatics
Direct optogenetic stimulation of smooth muscle cells to control gastric contractility.
Theranostics
Inverse mechano-electrical reconstruction of cardiac excitation wave patterns from mechanical deformation using deep learning.
Chaos (Woodbury, N.Y.)
High-Resolution Optical Measurement of Cardiac Restitution, Contraction, and Fibrillation Dynamics in Beating vs. Blebbistatin-Uncoupled Isolated Rabbit Hearts.
Frontiers in physiology
In silico signaling modeling to understand cancer pathways and treatment responses.
Briefings in bioinformatics
Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal.
Diagnostics (Basel, Switzerland)
Synchronization-based reconstruction of electromechanical wave dynamics in elastic excitable media.
Chaos (Woodbury, N.Y.)
β6 -integrin serves as a novel serum tumor marker for colorectal carcinoma.
International journal of cancer
Marker-Free Tracking for Motion Artifact Compensation and Deformation Measurements in Optical Mapping Videos of Contracting Hearts.
Frontiers in physiology
Electromechanical optical mapping.
Progress in biophysics and molecular biology
Features of Chaotic Transients in Excitable Media Governed by Spiral and Scroll Waves.
Physical review letters
Optogenetic Light Crafting Tools for the Control of Cardiac Arrhythmias.
Methods in molecular biology (Clifton, N.J.)
Address
555 & 535 Mission Bay Blvd Sou, Rm 352S
UCSF Box 3120
San Francisco, CA 94158
United States